☰ Navigation Tabs
Complex of I223V mutant variant of neuraminidase from H1N1 influenza virus with oseltamivir
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5NWE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 291 0.1 M HEPES pH 6.75, 7% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.85 56.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.458 α = 90 b = 137.576 β = 90 c = 118.61 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.36 44.92 96.6 0.081 0.997 10.51 3.42 681145 11.86
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.36 1.45 95.3 0.628 0.666 1.81 3.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5NWE 1.36 44.92 196823 1989 96.59 0.1401 0.13978 0.1424 0.1712 0.1728 RANDOM 12.894
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 0.88 -0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.606 r_sphericity_free 22.156 r_dihedral_angle_3_deg 12.113 r_dihedral_angle_4_deg 11.681 r_dihedral_angle_1_deg 7.407 r_sphericity_bonded 5.339 r_long_range_B_refined 3.074 r_long_range_B_other 3.074 r_rigid_bond_restr 2.836 r_scangle_other 1.963
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.606 r_sphericity_free 22.156 r_dihedral_angle_3_deg 12.113 r_dihedral_angle_4_deg 11.681 r_dihedral_angle_1_deg 7.407 r_sphericity_bonded 5.339 r_long_range_B_refined 3.074 r_long_range_B_other 3.074 r_rigid_bond_restr 2.836 r_scangle_other 1.963 r_angle_refined_deg 1.798 r_scbond_it 1.723 r_scbond_other 1.722 r_angle_other_deg 1.261 r_mcangle_other 1.239 r_mcangle_it 1.238 r_mcbond_it 1.046 r_mcbond_other 1.04 r_chiral_restr 0.12 r_bond_refined_d 0.017 r_gen_planes_refined 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5982 Nucleic Acid Atoms Solvent Atoms 1072 Heterogen Atoms 233
Software Software Software Name Purpose REFMAC refinement XDS data scaling