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Humanized alpha-AChBP (acetylcholine binding protein) in complex with lobeline.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5AFM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1 M HEPES pH 7.5, 8% ethylene glycol and 10% PEG8000.
Crystal Properties Matthews coefficient Solvent content 3.07 59.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.785 α = 90 b = 113.32 β = 90 c = 146.964 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92818 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 89.74 100 0.141 0.152 0.057 12.7 13.5 51511
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.89 3.13 1.19
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5AFM 2.5 89.74 48891 2551 99.99 0.2092 0.2071 0.2387 0.2499 0.2364 RANDOM 69.371
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.85 -1.59 -3.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.356 r_dihedral_angle_4_deg 15.838 r_dihedral_angle_3_deg 12.44 r_dihedral_angle_1_deg 6.554 r_angle_refined_deg 1.4 r_angle_other_deg 0.919 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.356 r_dihedral_angle_4_deg 15.838 r_dihedral_angle_3_deg 12.44 r_dihedral_angle_1_deg 6.554 r_angle_refined_deg 1.4 r_angle_other_deg 0.919 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8400 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 303
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction SCALA data scaling DIMPLE phasing XDS data reduction