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Crystal structure of D141E variant of B. pseudomallei KatG
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MWV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 16-20% MPD, pH 5.6 0.1 M sodium citrate
Crystal Properties Matthews coefficient Solvent content 3.22 61.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.739 α = 90 b = 116.198 β = 90 c = 175.018 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 96.81 99.2 0.108 9.3 5.7 178948
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 94.9 0.433 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MWV 1.8 20 178948 9292 99.08 0.1565 0.1548 0.1674 0.1905 0.1996 RANDOM 22.689
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 0.55 -0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.141 r_dihedral_angle_4_deg 16.999 r_dihedral_angle_3_deg 12.816 r_dihedral_angle_1_deg 6.062 r_mcangle_it 2.91 r_angle_refined_deg 2.393 r_mcbond_it 2.037 r_mcbond_other 2.017 r_angle_other_deg 1.279 r_chiral_restr 0.178
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.141 r_dihedral_angle_4_deg 16.999 r_dihedral_angle_3_deg 12.816 r_dihedral_angle_1_deg 6.062 r_mcangle_it 2.91 r_angle_refined_deg 2.393 r_mcbond_it 2.037 r_mcbond_other 2.017 r_angle_other_deg 1.279 r_chiral_restr 0.178 r_bond_refined_d 0.032 r_gen_planes_refined 0.017 r_gen_planes_other 0.011 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11012 Nucleic Acid Atoms Solvent Atoms 1597 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling MOLREP phasing