☰ Navigation Tabs
Crystal structure of catalase-peroxidase KatG with isonicotinic acid hydrazide and AMP bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MWV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 16-20% PEG 4000, 20% MPD, 25 mM NaCl, 0.1 M sodium citrate pH 5.6
Crystal Properties Matthews coefficient Solvent content 3.14 60.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.436 α = 90 b = 114.172 β = 90 c = 174.232 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2009-08-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97934 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.887 95.5 90.1 0.11 9.2 3.6 145103
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.887 2 87 0.717 1.9 2.9 19880
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MWV 1.887 20 137960 7143 90.1 0.1633 0.1618 0.1724 0.1927 0.2007 RANDOM 25.575
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 -0.54 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.779 r_dihedral_angle_4_deg 16.357 r_dihedral_angle_3_deg 13.396 r_dihedral_angle_1_deg 6.18 r_mcangle_it 2.404 r_angle_refined_deg 2.036 r_mcbond_it 1.556 r_mcbond_other 1.555 r_angle_other_deg 1.198 r_chiral_restr 0.129
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.779 r_dihedral_angle_4_deg 16.357 r_dihedral_angle_3_deg 13.396 r_dihedral_angle_1_deg 6.18 r_mcangle_it 2.404 r_angle_refined_deg 2.036 r_mcbond_it 1.556 r_mcbond_other 1.555 r_angle_other_deg 1.198 r_chiral_restr 0.129 r_bond_refined_d 0.023 r_gen_planes_refined 0.012 r_gen_planes_other 0.01 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11010 Nucleic Acid Atoms Solvent Atoms 1360 Heterogen Atoms 157
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling MOLREP phasing