5TCE
N-terminal microdomain of 34-mers from HsDHODH - N-t(DH)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 700 uM peptide | 90% H2O/10% D2O | 0 | 7.4 | ambient atm | 310 | Bruker AVANCE III 600 |
2 | 2D DQF-COSY | 700 uM peptide | 90% H2O/10% D2O | 0 | 7.4 | ambient atm | 310 | Bruker AVANCE III 600 |
3 | 2D 1H-1H NOESY | 700 uM peptide | 90% H2O/10% D2O | 0 | 7.4 | ambient atm | 310 | Bruker AVANCE III 600 |
4 | 2D 1H-15N HSQC | 700 uM peptide | 90% H2O/10% D2O | 0 | 7.4 | ambient atm | 310 | Bruker AVANCE III 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
2 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | data analysis | NMRView | Johnson, One Moon Scientific | |
4 | peak picking | NMRView | Johnson, One Moon Scientific | |
5 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
6 | chemical shift calculation | NMRView | Johnson, One Moon Scientific | |
7 | structure calculation | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
8 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |