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Crystal structure of citrus MAF1 in space group P 31 2 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.6 291.15 1 M ammonium di-hydrogen phosphate, 0.1 M Tris-sodium pH 5.6, 10% glycerol
Crystal Properties Matthews coefficient Solvent content 3.13 60.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.106 α = 90 b = 86.106 β = 90 c = 182.167 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 47.086 100 0.214 0.225 0.997 10.94 9.4 35279 -3 69.534
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.85 3.02 99.9 2.668 1.05
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.85 20 17882 975 99.58 0.1994 0.1975 0.2066 0.233 0.2346 RANDOM 81.165
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.2 1.1 2.2 -7.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.536 r_dihedral_angle_3_deg 16.265 r_dihedral_angle_4_deg 11.908 r_mcangle_it 6.776 r_dihedral_angle_1_deg 4.932 r_mcbond_it 4.415 r_mcbond_other 4.413 r_angle_refined_deg 1.546 r_angle_other_deg 1.025 r_chiral_restr 0.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.536 r_dihedral_angle_3_deg 16.265 r_dihedral_angle_4_deg 11.908 r_mcangle_it 6.776 r_dihedral_angle_1_deg 4.932 r_mcbond_it 4.415 r_mcbond_other 4.413 r_angle_refined_deg 1.546 r_angle_other_deg 1.025 r_chiral_restr 0.084 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2984 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 10
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SHELXDE phasing