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Crystal structure of Co-CAO1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5U8X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 281 sodium polyacrylat/HEPES pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.74 55.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.44 α = 90 b = 100.44 β = 90 c = 447.977 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97919 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 49 99.5 0.281 7.76 4.3 91967
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.65 99 2.93 0.92 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5U8X 2.5 49 87514 4453 99.51 0.18656 0.18475 0.1914 0.22257 0.2278 RANDOM 38.697
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.07 0.13 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.773 r_sphericity_bonded 20.176 r_dihedral_angle_4_deg 16.35 r_dihedral_angle_3_deg 14.577 r_dihedral_angle_1_deg 6.861 r_long_range_B_refined 6.304 r_long_range_B_other 6.291 r_scangle_other 4.602 r_mcangle_it 3.806 r_mcangle_other 3.806
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.773 r_sphericity_bonded 20.176 r_dihedral_angle_4_deg 16.35 r_dihedral_angle_3_deg 14.577 r_dihedral_angle_1_deg 6.861 r_long_range_B_refined 6.304 r_long_range_B_other 6.291 r_scangle_other 4.602 r_mcangle_it 3.806 r_mcangle_other 3.806 r_scbond_it 2.836 r_scbond_other 2.836 r_mcbond_it 2.419 r_mcbond_other 2.417 r_angle_refined_deg 1.507 r_angle_other_deg 0.946 r_chiral_restr 0.085 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15933 Nucleic Acid Atoms Solvent Atoms 884 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling REFMAC phasing