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Structure of Fe-CAO1 in complex with beta-fluororesveratrol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5U8X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 281 Sodium polyacrylate/HEPES pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.78 55.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.037 α = 90 b = 101.037 β = 90 c = 448.622 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.97946 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 49.28 97.7 0.17 11.9 9.7 205626
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.01 88.5 2.1 0.96 8.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5U8X 1.9 49.28 196117 9497 97.67 0.18318 0.18168 0.1909 0.21346 0.222 RANDOM 35.403
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.02 0.04 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.091 r_sphericity_bonded 15.85 r_dihedral_angle_4_deg 14.894 r_dihedral_angle_3_deg 13.296 r_dihedral_angle_1_deg 6.793 r_long_range_B_refined 6.69 r_long_range_B_other 6.69 r_scangle_other 5.092 r_mcangle_other 3.551 r_mcangle_it 3.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.091 r_sphericity_bonded 15.85 r_dihedral_angle_4_deg 14.894 r_dihedral_angle_3_deg 13.296 r_dihedral_angle_1_deg 6.793 r_long_range_B_refined 6.69 r_long_range_B_other 6.69 r_scangle_other 5.092 r_mcangle_other 3.551 r_mcangle_it 3.55 r_scbond_it 3.375 r_scbond_other 3.375 r_mcbond_it 2.606 r_mcbond_other 2.603 r_angle_refined_deg 1.549 r_angle_other_deg 0.938 r_chiral_restr 0.094 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15948 Nucleic Acid Atoms Solvent Atoms 1588 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling