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Crystal structure of citrate synthase from homo sapiens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 0.1 M Succinic Acid pH 7.0, 12% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.82 56.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.76 α = 90 b = 76.76 β = 90 c = 198.764 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2015-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 50.01 93.01 0.068 0.068 0.094 0.029 25.87 8.5 29021 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.19 93.6 0.323 0.323 0.483 0.148 0.968 3.29 8.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.16 50.01 29021 1551 93.01 0.19789 0.19596 0.23232 0.2118 RANDOM 52.369
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.48 2.48 -4.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.894 r_dihedral_angle_4_deg 16.994 r_dihedral_angle_3_deg 13.64 r_dihedral_angle_1_deg 5.809 r_long_range_B_refined 4.317 r_long_range_B_other 4.261 r_angle_other_deg 3.726 r_scangle_other 1.835 r_mcangle_it 1.666 r_mcangle_other 1.666
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.894 r_dihedral_angle_4_deg 16.994 r_dihedral_angle_3_deg 13.64 r_dihedral_angle_1_deg 5.809 r_long_range_B_refined 4.317 r_long_range_B_other 4.261 r_angle_other_deg 3.726 r_scangle_other 1.835 r_mcangle_it 1.666 r_mcangle_other 1.666 r_angle_refined_deg 1.474 r_scbond_it 1.087 r_scbond_other 1.087 r_mcbond_it 0.984 r_mcbond_other 0.982 r_chiral_restr 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3426 Nucleic Acid Atoms Solvent Atoms 159 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing HKL-3000 phasing