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CRYSTAL STRUCTURE OF DER P 1 COMPLEXED WITH FAB 4C1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3F5V 3F5V, 3RVV experimental model PDB 3RVV 3F5V, 3RVV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 0.1M HEPES, 10% W/V PEG4000, 0.05M
GLYGLYGLY, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 2.3 46.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.109 α = 90 b = 59.377 β = 90 c = 236.967 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r MIRRORS 2009-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9793 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 92.6 0.088 0.088 24.8 6.3 23380 -3 55.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54 87.6 0.596 0.596 2.7 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3F5V, 3RVV 2.5 50 22108 1194 91.8 0.18 0.178 0.1967 0.229 0.2357 RANDOM 55.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.9 1.84 -0.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.926 r_dihedral_angle_4_deg 18.035 r_dihedral_angle_3_deg 16.418 r_dihedral_angle_1_deg 6.854 r_scangle_it 2.903 r_scbond_it 1.869 r_angle_refined_deg 1.479 r_mcangle_it 1.054 r_angle_other_deg 0.885 r_mcbond_it 0.564
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.926 r_dihedral_angle_4_deg 18.035 r_dihedral_angle_3_deg 16.418 r_dihedral_angle_1_deg 6.854 r_scangle_it 2.903 r_scbond_it 1.869 r_angle_refined_deg 1.479 r_mcangle_it 1.054 r_angle_other_deg 0.885 r_mcbond_it 0.564 r_mcbond_other 0.13 r_chiral_restr 0.081 r_bond_refined_d 0.015 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5038 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling MOLREP phasing HKL-3000 phasing Coot model building