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CRYSTAL STRUCTURE OF DER F 1 COMPLEXED WITH FAB 4C1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3D6S PDB ENTRIES 3D6S, 1MLB experimental model PDB 1MLB PDB ENTRIES 3D6S, 1MLB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 0.1M HEPES, 18% W/V PEG12K, PH 7.0,
VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 2.36 47.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.403 α = 90 b = 79.428 β = 105.2 c = 72.199 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r MIRRORS 2008-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.8 0.061 0.061 23.6 3.2 55979 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 100 0.557 0.557 2.5 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 3D6S, 1MLB 1.9 20 53171 2783 99.45 0.15376 0.15169 0.1609 0.19421 0.2024 RANDOM 31.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.49 -0.05 1.02 -1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.964 r_dihedral_angle_4_deg 18.897 r_dihedral_angle_3_deg 12.314 r_dihedral_angle_1_deg 6.487 r_long_range_B_refined 5.824 r_long_range_B_other 5.714 r_angle_other_deg 3.798 r_scangle_other 2.99 r_scbond_it 1.868 r_scbond_other 1.867
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.964 r_dihedral_angle_4_deg 18.897 r_dihedral_angle_3_deg 12.314 r_dihedral_angle_1_deg 6.487 r_long_range_B_refined 5.824 r_long_range_B_other 5.714 r_angle_other_deg 3.798 r_scangle_other 2.99 r_scbond_it 1.868 r_scbond_other 1.867 r_mcangle_other 1.822 r_mcangle_it 1.821 r_angle_refined_deg 1.781 r_mcbond_it 1.169 r_mcbond_other 1.168 r_chiral_restr 0.112 r_gen_planes_other 0.026 r_bond_refined_d 0.016 r_gen_planes_refined 0.016 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5093 Nucleic Acid Atoms Solvent Atoms 650 Heterogen Atoms 31
Software Software Software Name Purpose HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing MOLREP phasing REFMAC refinement