☰ Navigation Tabs
Crystal structure of murine receptor-interacting protein kinase 4 (Ripk4) D143N in complex with ATP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 292 0.1M HEPES pH 7.5, 0.2M magnesium chloride, 10% 2-propanol, 15% ethylene glycol, 10% PEG4000
Crystal Properties Matthews coefficient Solvent content 3.67 66.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.569 α = 90 b = 110.199 β = 90 c = 145.324 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2015-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 50.01 99.8 0.075 21.1 5.6 17069
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.65 50.01 16166 861 99.67 0.2043 0.20194 0.24839 0.2765 RANDOM 68.327
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.23 3.21 -5.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.762 r_dihedral_angle_3_deg 14.418 r_dihedral_angle_4_deg 11.786 r_long_range_B_refined 9.467 r_long_range_B_other 9.466 r_scangle_other 7.046 r_mcangle_it 6.746 r_mcangle_other 6.743 r_dihedral_angle_1_deg 6.193 r_scbond_it 4.877
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.762 r_dihedral_angle_3_deg 14.418 r_dihedral_angle_4_deg 11.786 r_long_range_B_refined 9.467 r_long_range_B_other 9.466 r_scangle_other 7.046 r_mcangle_it 6.746 r_mcangle_other 6.743 r_dihedral_angle_1_deg 6.193 r_scbond_it 4.877 r_scbond_other 4.607 r_mcbond_other 4.329 r_mcbond_it 4.327 r_angle_refined_deg 1.392 r_angle_other_deg 0.952 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2080 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing