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Crystal structure of murine receptor-interacting protein 4 (Ripk4) D143N bound to staurosporine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 292 0.1M HEPES pH 7.5, 200 mM magnesium chloride, 10% isopropanol, 15% ethylene glycol, and 10% PEG 4000
Crystal Properties Matthews coefficient Solvent content 3.6 65.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.158 α = 90 b = 109.563 β = 90 c = 146.221 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 99.9 0.053 27.1 4.8 37451
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 30 18843 969 99.63 0.22414 0.2225 0.2242 0.25595 0.2594 RANDOM 63.086
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.44 1.16 -4.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.165 r_dihedral_angle_4_deg 16.359 r_dihedral_angle_3_deg 12.507 r_dihedral_angle_1_deg 6.181 r_long_range_B_refined 5.903 r_long_range_B_other 5.902 r_mcangle_it 4.331 r_mcangle_other 4.329 r_scangle_other 4.082 r_mcbond_it 2.588
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.165 r_dihedral_angle_4_deg 16.359 r_dihedral_angle_3_deg 12.507 r_dihedral_angle_1_deg 6.181 r_long_range_B_refined 5.903 r_long_range_B_other 5.902 r_mcangle_it 4.331 r_mcangle_other 4.329 r_scangle_other 4.082 r_mcbond_it 2.588 r_mcbond_other 2.584 r_scbond_it 2.444 r_scbond_other 2.443 r_angle_refined_deg 1.65 r_angle_other_deg 0.844 r_chiral_restr 0.066 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2044 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing