5X3Y
Refined solution structure of musashi1 RBD2
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 250 uM [U-100% 13C; U-100% 15N] Msi1 RBD2 | 95% H2O/5% D2O | 100 mM | 6.0 | ambient atm | 298 | Bruker DRX 600 |
2 | 2D 1H-13C HSQC | 250 uM [U-100% 13C; U-100% 15N] Msi1 RBD2 | 95% H2O/5% D2O | 100 mM | 6.0 | ambient atm | 298 | Bruker DRX 600 |
3 | 3D 1H-15N NOESY | 250 uM [U-100% 13C; U-100% 15N] Msi1 RBD2 | 95% H2O/5% D2O | 100 mM | 6.0 | ambient atm | 298 | Bruker DRX 600 |
4 | 3D 1H-13C NOESY | 250 uM [U-100% 13C; U-100% 15N] Msi1 RBD2 | 95% H2O/5% D2O | 100 mM | 6.0 | ambient atm | 298 | Bruker DRX 600 |
5 | 3D HNCO | 250 uM [U-100% 13C; U-100% 15N] Msi1 RBD2 | 95% H2O/5% D2O | 100 mM | 6.0 | ambient atm | 298 | Bruker DRX 600 |
6 | 3D CBCA(CO)NH | 250 uM [U-100% 13C; U-100% 15N] Msi1 RBD2 | 95% H2O/5% D2O | 100 mM | 6.0 | ambient atm | 298 | Bruker DRX 600 |
7 | 3D HNCACB | 250 uM [U-100% 13C; U-100% 15N] Msi1 RBD2 | 95% H2O/5% D2O | 100 mM | 6.0 | ambient atm | 298 | Bruker DRX 600 |
8 | 3D HNCA | 250 uM [U-100% 13C; U-100% 15N] Msi1 RBD2 | 95% H2O/5% D2O | 100 mM | 6.0 | ambient atm | 298 | Bruker DRX 600 |
9 | 3D HBHA(CO)NH | 250 uM [U-100% 13C; U-100% 15N] Msi1 RBD2 | 95% H2O/5% D2O | 100 mM | 6.0 | ambient atm | 298 | Bruker DRX 600 |
10 | 3D HCCH-TOCSY | 250 uM [U-100% 13C; U-100% 15N] Msi1 RBD2 | 95% H2O/5% D2O | 100 mM | 6.0 | ambient atm | 298 | Bruker DRX 600 |
11 | 3D HCCH-COSY | 250 uM [U-100% 13C; U-100% 15N] Msi1 RBD2 | 95% H2O/5% D2O | 100 mM | 6.0 | ambient atm | 298 | Bruker DRX 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | chemical shift assignment | MAGRO | Kobayashi | |
5 | chemical shift assignment | NMRView | Johnson, One Moon Scientific |