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Solution structure of musashi1 RBD2 in complex with RNA
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3') 95% H2O/5% D2O 100 mM 6.0 ambient atm 298 Bruker DRX 600 2 2D 1H-13C HSQC 300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3') 95% H2O/5% D2O 100 mM 6.0 ambient atm 298 Bruker DRX 600 3 3D 1H-15N NOESY 300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3') 95% H2O/5% D2O 100 mM 6.0 ambient atm 298 Bruker DRX 600 4 3D 1H-13C NOESY 300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3') 95% H2O/5% D2O 100 mM 6.0 ambient atm 298 Bruker DRX 600 5 3D 1H-13C NOESY 300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3') 95% H2O/5% D2O 100 mM 6.0 ambient atm 298 Bruker AVANCE III 950 6 3D HNCO 300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3') 95% H2O/5% D2O 100 mM 6.0 ambient atm 298 Bruker DRX 600 7 3D CBCA(CO)NH 300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3') 95% H2O/5% D2O 100 mM 6.0 ambient atm 298 Bruker DRX 600 8 3D HNCACB 300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3') 95% H2O/5% D2O 100 mM 6.0 ambient atm 298 Bruker DRX 600 9 3D HNCA 300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3') 95% H2O/5% D2O 100 mM 6.0 ambient atm 298 Bruker DRX 600 10 3D HBHA(CO)NH 300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3') 95% H2O/5% D2O 100 mM 6.0 ambient atm 298 Bruker DRX 600 11 3D HCCH-TOCSY 300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3') 95% H2O/5% D2O 100 mM 6.0 ambient atm 298 Bruker DRX 600 12 3D HCCH-COSY 300 uM [U-100% 13C; U-100% 15N] Msi1 RBD2, 300 uM RNA (5'-R(*GP*UP*AP*GP*U)-3') 95% H2O/5% D2O 100 mM 6.0 ambient atm 298 Bruker DRX 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 600 2 Bruker AVANCE III 950
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment NMRView Johnson, One Moon Scientific 4 chemical shift assignment MAGRO Kobayashi 5 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax