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Crystal Structure of the mutant Human ROR gamma Ligand Binding Domain With Ursolic acid.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3L0L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 0.1M Hepes pH7.5, 5% PEG4000, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.57 52.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.95 α = 90 b = 116.95 β = 90 c = 77.96 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-11-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.98 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 101.28 100 0.098 11.4 21.3 30947
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 100 0.435 1.8 11.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3L0L 2.2 101.28 29361 1556 100 0.1789 0.17593 0.1759 0.23511 0.2367 RANDOM 30.102
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.04 -0.07 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.154 r_dihedral_angle_4_deg 21.215 r_dihedral_angle_3_deg 15.578 r_long_range_B_refined 8.386 r_dihedral_angle_1_deg 5.642 r_scbond_it 4.448 r_mcangle_it 3.58 r_mcbond_it 2.578 r_angle_refined_deg 1.943 r_chiral_restr 0.136
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.154 r_dihedral_angle_4_deg 21.215 r_dihedral_angle_3_deg 15.578 r_long_range_B_refined 8.386 r_dihedral_angle_1_deg 5.642 r_scbond_it 4.448 r_mcangle_it 3.58 r_mcbond_it 2.578 r_angle_refined_deg 1.943 r_chiral_restr 0.136 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3810 Nucleic Acid Atoms Solvent Atoms 298 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing