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Truncated AlyQ with CBM32 and alginate lyase domains
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UAI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 293 30% PEG 3350, 0.1M sodium acetate pH 4.0, 0.2M potassium phosphate
Crystal Properties Matthews coefficient Solvent content 2.82 56.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.317 α = 90 b = 74.317 β = 90 c = 179.733 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2016-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 37.19 97.5 0.096 0.117 5.8 2.9 22663
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 98.4 0.396 0.483 2.1 2.91
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1UAI 2.3 37.19 21500 1144 97.43 0.2289 0.2264 0.2344 0.2745 0.2773 RANDOM 39.063
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.4 2.4 -4.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.054 r_dihedral_angle_4_deg 20.039 r_dihedral_angle_3_deg 16.306 r_dihedral_angle_1_deg 7.401 r_angle_refined_deg 1.337 r_angle_other_deg 0.468 r_chiral_restr 0.057 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.054 r_dihedral_angle_4_deg 20.039 r_dihedral_angle_3_deg 16.306 r_dihedral_angle_1_deg 7.401 r_angle_refined_deg 1.337 r_angle_other_deg 0.468 r_chiral_restr 0.057 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2991 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOLREP phasing d*TREK data reduction