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Crystal Structure Analysis of the BRD4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 20% PEG3350, 0.2M NaNO3, 0.1M HEPES, 10% EtGhly,pH7
Crystal Properties Matthews coefficient Solvent content 1.91 35.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.62 α = 90 b = 47.23 β = 90 c = 78.51 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS3 6M 2015-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97853 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 39.25 98.9 0.162 0.173 0.061 0.991 7.1 7.2 11017
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.91 99.6 0.659 0.705 0.245 0.902 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.87 39.25 10443 537 98.44 0.1927 0.1898 0.1998 0.247 0.2462 RANDOM 25.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.27 -1.02 -3.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.903 r_dihedral_angle_3_deg 14.659 r_dihedral_angle_4_deg 11.915 r_dihedral_angle_1_deg 6.089 r_angle_refined_deg 1.797 r_angle_other_deg 1.016 r_chiral_restr 0.115 r_bond_refined_d 0.016 r_gen_planes_refined 0.011 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.903 r_dihedral_angle_3_deg 14.659 r_dihedral_angle_4_deg 11.915 r_dihedral_angle_1_deg 6.089 r_angle_refined_deg 1.797 r_angle_other_deg 1.016 r_chiral_restr 0.115 r_bond_refined_d 0.016 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1115 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction iMOSFLM data reduction MOLREP phasing