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Crystal structure of SSB complexed with myc
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EYG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 25%PEG4000, 100mM MES Sodium Salt, 200mM Magnesium Chloride
Crystal Properties Matthews coefficient Solvent content 2.48 50.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.11 α = 90 b = 60.11 β = 90 c = 130.868 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 210 2017-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13C1 0.975 NSRRC BL13C1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.67 30 99.5 17.29 2.9 14947
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.67 2.78
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1EYG 2.67 30 14163 755 98.95 0.20986 0.20749 0.2154 0.25648 0.2625 RANDOM 69.666
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 -0.3 -0.61 1.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.75 r_dihedral_angle_4_deg 20.307 r_dihedral_angle_3_deg 18.772 r_long_range_B_other 13.999 r_long_range_B_refined 13.995 r_scangle_other 9.187 r_mcangle_it 8.581 r_mcangle_other 8.579 r_dihedral_angle_1_deg 6.999 r_scbond_it 5.918
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.75 r_dihedral_angle_4_deg 20.307 r_dihedral_angle_3_deg 18.772 r_long_range_B_other 13.999 r_long_range_B_refined 13.995 r_scangle_other 9.187 r_mcangle_it 8.581 r_mcangle_other 8.579 r_dihedral_angle_1_deg 6.999 r_scbond_it 5.918 r_scbond_other 5.916 r_mcbond_it 5.54 r_mcbond_other 5.54 r_angle_refined_deg 1.617 r_angle_other_deg 1.259 r_chiral_restr 0.092 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3246 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing