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Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 7 at 288 K (2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IU7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 7.4 289 1.05M potassium-sodium tartrate, 25mM HEPES
Crystal Properties Matthews coefficient Solvent content 3.22 61.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 193.637 α = 90 b = 64.788 β = 117.14 c = 158.954 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 288 CCD RAYONIX MX225HE 2015-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.0 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 100 0.097 0.112 0.054 8.4 4.1 193440 17.95
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 99.8 0.732 0.846 0.418 0.739 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1IU7 1.695 39.686 1.34 193280 9573 99.38 0.1522 0.1511 0.1483 0.1734 0.1707 24.6705
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 7.202 f_angle_d 0.854 f_chiral_restr 0.06 f_bond_d 0.006 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9738 Nucleic Acid Atoms Solvent Atoms 1009 Heterogen Atoms 13
Software Software Software Name Purpose SCALEPACK data scaling PHENIX refinement PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing