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Crystal structure of an outward-open nucleotide-bound state of the eukaryotic ABC multidrug transporter CmABCB1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 21% PEG 2000 MME, 50 mM potassium nitrate and 50 mM magnesium nitrate
Crystal Properties Matthews coefficient Solvent content 3.37 63.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 174.34 α = 90 b = 174.34 β = 90 c = 174.34 γ = 90
Symmetry Space Group P 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 43.62 99.8 0.152 13 21.1 72007
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 43.62 67507 3606 99.59 0.16747 0.16526 0.1739 0.20764 0.2136 RANDOM 59.61
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.25 r_sphericity_bonded 20.022 r_dihedral_angle_4_deg 18.64 r_dihedral_angle_3_deg 15.481 r_sphericity_free 12.198 r_long_range_B_other 7.543 r_long_range_B_refined 7.487 r_mcangle_other 6.275 r_mcangle_it 6.272 r_dihedral_angle_1_deg 5.774
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.25 r_sphericity_bonded 20.022 r_dihedral_angle_4_deg 18.64 r_dihedral_angle_3_deg 15.481 r_sphericity_free 12.198 r_long_range_B_other 7.543 r_long_range_B_refined 7.487 r_mcangle_other 6.275 r_mcangle_it 6.272 r_dihedral_angle_1_deg 5.774 r_scangle_other 5.658 r_mcbond_it 4.444 r_mcbond_other 4.439 r_scbond_other 4.301 r_scbond_it 4.299 r_rigid_bond_restr 3.307 r_angle_refined_deg 1.537 r_angle_other_deg 1.159 r_chiral_restr 0.165 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4488 Nucleic Acid Atoms Solvent Atoms 435 Heterogen Atoms 103
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing