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Structure of HEWL co-crystallised with Cinnamaldehyde
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DPX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 292 1.5 M NaCl and 10% Ethanol
Crystal Properties Matthews coefficient Solvent content 2.01 38.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.751 α = 90 b = 78.751 β = 90 c = 37.1 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.08 37.1 99.8 0.063 12 6.7 50857
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.08 1.14 0.332
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1dpx 1.08 37.1 48174 2599 99.69 0.16599 0.16455 0.1745 0.19414 0.2014 RANDOM 14.631
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.294 r_dihedral_angle_4_deg 19.629 r_dihedral_angle_3_deg 12.149 r_dihedral_angle_1_deg 6.349 r_long_range_B_refined 6.215 r_long_range_B_other 6.214 r_scangle_other 3.606 r_angle_other_deg 2.685 r_angle_refined_deg 2.643 r_scbond_it 2.519
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.294 r_dihedral_angle_4_deg 19.629 r_dihedral_angle_3_deg 12.149 r_dihedral_angle_1_deg 6.349 r_long_range_B_refined 6.215 r_long_range_B_other 6.214 r_scangle_other 3.606 r_angle_other_deg 2.685 r_angle_refined_deg 2.643 r_scbond_it 2.519 r_scbond_other 2.519 r_mcangle_it 1.716 r_mcangle_other 1.716 r_mcbond_it 1.314 r_mcbond_other 1.281 r_chiral_restr 0.231 r_bond_refined_d 0.033 r_gen_planes_refined 0.017 r_gen_planes_other 0.016 r_bond_other_d 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1000 Nucleic Acid Atoms Solvent Atoms 228 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing