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Crystal structure KPC-2 beta-lactamase complexed with WCK 5107 by soaking
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 295 20% PEG 6000, 100 mM citrate pH 4.0, 100 mM KSCN, and 10 mM CdCl2. Crystal was soaked for 3hr in 10mM WCK 5107 at pH 5.0
Crystal Properties Matthews coefficient Solvent content 1.86 33.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.44 α = 92.31 b = 37.416 β = 90.04 c = 82.128 γ = 95.26
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.12708 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 37.23 94.9 0.046 0.065 0.046 0.997 11.9 2 51151
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 89.1 0.42 0.594 0.42 0.617 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 34.29 48543 2590 94.84 0.1522 0.1503 0.1639 0.187 0.1944 RANDOM 13.996
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.04 r_dihedral_angle_4_deg 15.964 r_dihedral_angle_3_deg 13.084 r_dihedral_angle_1_deg 6.301 r_angle_refined_deg 1.792 r_angle_other_deg 1.1 r_chiral_restr 0.294 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.04 r_dihedral_angle_4_deg 15.964 r_dihedral_angle_3_deg 13.084 r_dihedral_angle_1_deg 6.301 r_angle_refined_deg 1.792 r_angle_other_deg 1.1 r_chiral_restr 0.294 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3977 Nucleic Acid Atoms Solvent Atoms 385 Heterogen Atoms 131
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction