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Crystal structure KPC-2 beta-lactamase complexed with WCK 5153 by soaking
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 295 of 20% PEG 6000, 100 mM citrate pH 4.0, 100 mM KSCN, 10 mM CdCl2, and 10mM WCK 5153.
Crystal Properties Matthews coefficient Solvent content 1.86 34.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.493 α = 92.3 b = 37.436 β = 90.21 c = 82.235 γ = 95.08
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.12708 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 37.26 92.6 0.03 0.042 0.03 0.998 15.2 2 67132
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.48 64.7 0.187 0.264 0.187 0.903 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 34.46 63748 3375 92.63 0.1467 0.1454 0.1687 0.176 RANDOM 10.922
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.498 r_dihedral_angle_4_deg 15.065 r_dihedral_angle_3_deg 12.092 r_dihedral_angle_1_deg 6.246 r_angle_refined_deg 2.352 r_angle_other_deg 1.065 r_chiral_restr 0.334 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.498 r_dihedral_angle_4_deg 15.065 r_dihedral_angle_3_deg 12.092 r_dihedral_angle_1_deg 6.246 r_angle_refined_deg 2.352 r_angle_other_deg 1.065 r_chiral_restr 0.334 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3977 Nucleic Acid Atoms Solvent Atoms 480 Heterogen Atoms 108
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction