6E5C
Solution NMR structure of a de novo designed double-stranded beta-helix
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.81 mM [U-99% 13C; U-99% 15N] 3NIK | 95% H20/5% H2o | 50 mM | 6.7 | 1 bar | 310.15 | Bruker AVANCE III 800 |
2 | 4D HC(CC-TOCSY(CO))NH | 0.81 mM [U-99% 13C; U-99% 15N] 3NIK | 95% H20/5% H2o | 50 mM | 6.7 | 1 bar | 310.15 | Bruker AVANCE III 800 |
3 | 4D 13C,15N edited HMQC-NOESY-HSQC | 0.81 mM [U-99% 13C; U-99% 15N] 3NIK | 95% H20/5% H2o | 50 mM | 6.7 | 1 bar | 310.15 | Bruker AVANCE III 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CS-ROSETTA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CS-ROSETTA | Shen, Vernon, Baker and Bax | |
2 | structure calculation | CS-ROSETTA | Shen, Vernon, Baker and Bax | |
3 | chemical shift assignment | 4D-CHAINS | Evangelidis, et. al. | |
4 | peak picking | Sparky | Goddard |