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Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other unpublished
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 296 0.2M magnesium chloride, 0.1M bis-tris, 25% (w/v) PEG3350
Crystal Properties Matthews coefficient Solvent content 2.13 42.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.279 α = 90 b = 89.367 β = 90 c = 120.941 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.979 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 97.6 0.997 9.84 4.48 81232
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.59 95.9 0.605 1.49 4.49
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT unpublished 1.5 37.25 77170 4062 97.59 0.1591 0.1578 0.1575 0.184 0.1843 RANDOM 15.129
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.2 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.355 r_dihedral_angle_4_deg 18.68 r_dihedral_angle_3_deg 12.45 r_dihedral_angle_1_deg 6.233 r_mcangle_it 1.754 r_angle_refined_deg 1.582 r_angle_other_deg 1.546 r_mcbond_it 1.255 r_mcbond_other 1.254 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.355 r_dihedral_angle_4_deg 18.68 r_dihedral_angle_3_deg 12.45 r_dihedral_angle_1_deg 6.233 r_mcangle_it 1.754 r_angle_refined_deg 1.582 r_angle_other_deg 1.546 r_mcbond_it 1.255 r_mcbond_other 1.254 r_chiral_restr 0.09 r_gen_planes_other 0.019 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4268 Nucleic Acid Atoms Solvent Atoms 597 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Coot model building PHASER phasing