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Crystal structure of human BAZ2B PHD zinc finger in complex with Fr 21
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4QF3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 2.2 - 2.4 M sodium/ potassium phosphate
Crystal Properties Matthews coefficient Solvent content 2.19 43.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.339 α = 90 b = 45.369 β = 90 c = 65.039 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9686 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 65.04 97.7 0.081 11.4 5.8 8453
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 4QF3 1.95 37.24 8019 410 97.14 0.1872 0.18451 0.1914 0.23884 0.2449 RANDOM 34.102
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.48 2.17 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.245 r_dihedral_angle_4_deg 18.775 r_dihedral_angle_3_deg 14.706 r_long_range_B_other 7.286 r_long_range_B_refined 7.278 r_dihedral_angle_1_deg 7.04 r_scangle_other 4.443 r_scbond_it 3.188 r_scbond_other 3.186 r_mcangle_it 2.905
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.245 r_dihedral_angle_4_deg 18.775 r_dihedral_angle_3_deg 14.706 r_long_range_B_other 7.286 r_long_range_B_refined 7.278 r_dihedral_angle_1_deg 7.04 r_scangle_other 4.443 r_scbond_it 3.188 r_scbond_other 3.186 r_mcangle_it 2.905 r_mcangle_other 2.904 r_mcbond_it 2.021 r_mcbond_other 2.009 r_angle_refined_deg 1.88 r_angle_other_deg 0.859 r_chiral_restr 0.12 r_bond_refined_d 0.02 r_gen_planes_refined 0.013 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 876 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling REFMAC phasing