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Crystal structure of BAZ2A PHD zinc finger in complex with H3 3-mer peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 2.2-2.4 M sodium/potassium phosphate
Crystal Properties Matthews coefficient Solvent content 2.45 49.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.385 α = 90 b = 73.385 β = 90 c = 99.671 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2015-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9282 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 46.03 99.9 0.097 15.5 8.6 19049
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2 46.03 18031 969 99.91 0.19514 0.19299 0.1995 0.23488 0.2348 RANDOM 35.64
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 0.99 -1.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.81 r_dihedral_angle_3_deg 12.301 r_dihedral_angle_4_deg 11.907 r_long_range_B_other 6.141 r_long_range_B_refined 6.139 r_dihedral_angle_1_deg 5.421 r_angle_other_deg 3.341 r_scangle_other 1.8 r_angle_refined_deg 1.552 r_mcangle_it 1.552
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.81 r_dihedral_angle_3_deg 12.301 r_dihedral_angle_4_deg 11.907 r_long_range_B_other 6.141 r_long_range_B_refined 6.139 r_dihedral_angle_1_deg 5.421 r_angle_other_deg 3.341 r_scangle_other 1.8 r_angle_refined_deg 1.552 r_mcangle_it 1.552 r_mcangle_other 1.551 r_scbond_it 1.305 r_scbond_other 1.305 r_mcbond_it 0.916 r_mcbond_other 0.916 r_chiral_restr 0.09 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1668 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing