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Structure of HuR RRM3 in complex with RNA (UUUUUU)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M TRIS pH 8.5 and 2.25 M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.3 46.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.31 α = 90 b = 79.74 β = 93.14 c = 51.07 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2015-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 8.99 99.7 0.137 13.4 6.82 124745 18274
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.06 0.965
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.01 8.98 17217 862 98.64 0.1719 0.16886 0.1789 0.23489 0.2335 RANDOM 28.765
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.735 r_dihedral_angle_3_deg 14.531 r_dihedral_angle_4_deg 13.227 r_long_range_B_refined 7.055 r_long_range_B_other 7.054 r_dihedral_angle_1_deg 6.36 r_scangle_other 5.373 r_scbond_it 3.769 r_scbond_other 3.769 r_mcangle_it 3.595
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.735 r_dihedral_angle_3_deg 14.531 r_dihedral_angle_4_deg 13.227 r_long_range_B_refined 7.055 r_long_range_B_other 7.054 r_dihedral_angle_1_deg 6.36 r_scangle_other 5.373 r_scbond_it 3.769 r_scbond_other 3.769 r_mcangle_it 3.595 r_mcangle_other 3.594 r_mcbond_it 2.471 r_mcbond_other 2.47 r_angle_refined_deg 1.767 r_angle_other_deg 1.118 r_chiral_restr 0.139 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1882 Nucleic Acid Atoms 120 Solvent Atoms 177 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing MOLREP phasing