6G3R

Structure of tellurium-centred Anderson-Evans polyoxotungstate (TEW) bound to the nucleotide binding domain of HSP70. Structure one of two TEW-HSP70 structures deposited.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.1 M Tris pH 8.5, 25% PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.5752.18

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.441α = 90
b = 64.691β = 90
c = 143.426γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M-F2017-10-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06DA1.000SLSX06DA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.448.0392.410.145151677
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.4995.80.80.781.31

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.448.0375412397092.460.140830.138760.17998RANDOM22.39
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.680.37-1.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.031
r_sphericity_free23.709
r_dihedral_angle_4_deg21.466
r_dihedral_angle_3_deg14.331
r_sphericity_bonded12.887
r_scangle_other6.411
r_rigid_bond_restr5.975
r_scbond_it5.932
r_scbond_other5.825
r_dihedral_angle_1_deg5.729
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.031
r_sphericity_free23.709
r_dihedral_angle_4_deg21.466
r_dihedral_angle_3_deg14.331
r_sphericity_bonded12.887
r_scangle_other6.411
r_rigid_bond_restr5.975
r_scbond_it5.932
r_scbond_other5.825
r_dihedral_angle_1_deg5.729
r_long_range_B_refined5.491
r_long_range_B_other5.408
r_mcangle_other3.558
r_mcangle_it3.519
r_mcbond_it3.069
r_mcbond_other3.045
r_angle_refined_deg2.376
r_angle_other_deg1.706
r_chiral_restr0.166
r_bond_refined_d0.03
r_gen_planes_refined0.014
r_gen_planes_other0.011
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2926
Nucleic Acid Atoms
Solvent Atoms317
Heterogen Atoms66

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing