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Crystal structure of the periplasmic domain of TgpA from Pseudomonas aeruginosa bound to ethylmercury
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 293 Ammonium dihydrogen phosphate 0.7 M, pH 7.2
Crystal Properties Matthews coefficient Solvent content 2.69 54.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.47 α = 90 b = 72.47 β = 90 c = 157.53 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2016-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 1.00775 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 48.7 99.9 8.4 7.1 529624
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 1.14
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 48.7 37765 1988 99.9 0.15796 0.15644 0.1674 0.18716 0.1959 RANDOM 28.031
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.34 -0.68
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 89.89 r_rigid_bond_restr 88.325 r_dihedral_angle_2_deg 31.176 r_dihedral_angle_4_deg 20.204 r_dihedral_angle_3_deg 12.904 r_long_range_B_refined 8.561 r_long_range_B_other 8.006 r_scangle_other 6.812 r_dihedral_angle_1_deg 5.937 r_scbond_it 4.716
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 89.89 r_rigid_bond_restr 88.325 r_dihedral_angle_2_deg 31.176 r_dihedral_angle_4_deg 20.204 r_dihedral_angle_3_deg 12.904 r_long_range_B_refined 8.561 r_long_range_B_other 8.006 r_scangle_other 6.812 r_dihedral_angle_1_deg 5.937 r_scbond_it 4.716 r_scbond_other 4.659 r_mcangle_other 3.418 r_mcangle_it 3.417 r_mcbond_it 2.48 r_mcbond_other 2.477 r_angle_refined_deg 1.578 r_angle_other_deg 0.84 r_chiral_restr 0.106 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2251 Nucleic Acid Atoms Solvent Atoms 316 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHELXCD phasing