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ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND AGONIST ISOPRENALINE AND NANOBODY Nb80
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2H6X 2H6X, 3P0G experimental model PDB 3P0G 2H6X, 3P0G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
Crystal Properties Matthews coefficient Solvent content 3.83 67.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.727 α = 90 b = 121.183 β = 90 c = 129.539 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 X 2M 2015-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.78 41.38 98.5 5.1 9.1 46114
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.78 2.88
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2H6X, 3P0G 2.8 41.38 28351 1439 64.88 0.28637 0.2848 0.2895 0.31745 0.3211 RANDOM 71.655
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.46 2.01 1.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.61 r_long_range_B_refined 14.865 r_long_range_B_other 14.865 r_dihedral_angle_4_deg 14.17 r_dihedral_angle_3_deg 11.795 r_mcangle_it 11.074 r_mcangle_other 11.073 r_scangle_other 10.776 r_mcbond_other 6.989 r_mcbond_it 6.988
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.61 r_long_range_B_refined 14.865 r_long_range_B_other 14.865 r_dihedral_angle_4_deg 14.17 r_dihedral_angle_3_deg 11.795 r_mcangle_it 11.074 r_mcangle_other 11.073 r_scangle_other 10.776 r_mcbond_other 6.989 r_mcbond_it 6.988 r_scbond_it 6.615 r_scbond_other 6.615 r_dihedral_angle_1_deg 4.872 r_angle_refined_deg 1.189 r_angle_other_deg 0.877 r_chiral_restr 0.061 r_bond_refined_d 0.008 r_bond_other_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7934 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 140
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing