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ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND PARTIAL AGONIST DOBUTAMINE AND NANOBODY Nb6B9
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2H6X 2H6X, 3P0G experimental model PDB 3P0G 2H6X, 3P0G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
Crystal Properties Matthews coefficient Solvent content 3.76 67.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.513 α = 90 b = 119.699 β = 90 c = 129.156 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2015-11-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.919 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 41.08 99.4 4.9 15.8 50091
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.79
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2H6X, 3P0G 2.7 41.08 28040 1416 58.75 0.24267 0.24088 0.2464 0.27826 0.2834 RANDOM 62.898
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.54 0.42 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.823 r_dihedral_angle_4_deg 17.874 r_dihedral_angle_3_deg 13.303 r_long_range_B_refined 7.748 r_long_range_B_other 7.748 r_mcangle_it 5.261 r_mcangle_other 5.26 r_dihedral_angle_1_deg 5.023 r_scangle_other 4.739 r_mcbond_it 3.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.823 r_dihedral_angle_4_deg 17.874 r_dihedral_angle_3_deg 13.303 r_long_range_B_refined 7.748 r_long_range_B_other 7.748 r_mcangle_it 5.261 r_mcangle_other 5.26 r_dihedral_angle_1_deg 5.023 r_scangle_other 4.739 r_mcbond_it 3.103 r_mcbond_other 3.102 r_scbond_it 2.675 r_scbond_other 2.675 r_angle_refined_deg 1.286 r_angle_other_deg 0.888 r_chiral_restr 0.061 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8014 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 252
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing