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CRYSTAL STRUCTURE OF FASCIN IN COMPLEX WITH COMPOUND 9
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6I10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 292 18-22% PEG 8000, 100-130 mM MgAc2, 100 mM citric acid pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.38 48.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.59 α = 90 b = 87.42 β = 90 c = 98.03 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-04-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 51.54 99.9 0.099 0.118 0.047 10 6.4 55080 26.232
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.77 100 1.559 1.836 0.703 1.1 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6I10 1.73 51.54 52292 2720 99.88 0.19 0.1887 0.1912 0.2163 0.2163 RANDOM 33.406
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.91 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.428 r_dihedral_angle_4_deg 14.131 r_dihedral_angle_3_deg 12.328 r_dihedral_angle_1_deg 5.12 r_mcangle_it 1.798 r_angle_refined_deg 1.629 r_angle_other_deg 1.598 r_mcbond_it 1.126 r_mcbond_other 1.122 r_chiral_restr 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.428 r_dihedral_angle_4_deg 14.131 r_dihedral_angle_3_deg 12.328 r_dihedral_angle_1_deg 5.12 r_mcangle_it 1.798 r_angle_refined_deg 1.629 r_angle_other_deg 1.598 r_mcbond_it 1.126 r_mcbond_other 1.122 r_chiral_restr 0.1 r_bond_refined_d 0.015 r_gen_planes_other 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3784 Nucleic Acid Atoms Solvent Atoms 274 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement xia2 data scaling PDB_EXTRACT data extraction xia2 data reduction