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Native crystal structure of fructuronate-tagaturonate epimerase UxaE from Cohnella laeviribosi
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8.5 287 0.2 M MgCl2, 15% (w/v) PEG 3350, 0.1 M Tris (base)/HCl (pH 8.5)
Crystal Properties Matthews coefficient Solvent content 2.38 48.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.816 α = 98.135 b = 73.47 β = 110.157 c = 74.673 γ = 90.119
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-11-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.97940 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 95.5 0.067 0.079 0.041 6.5 3.5 33313 56.5559819619
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54 94.7 0.407 0.478 0.249 0.89 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.50541976525 39.3889941356 2.00456201315 33309 1681 94.7921113293 0.193707068998 0.190601090377 0.1939 0.25100599925 0.2556 RANDOM 60.9654417152
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 6.50200168332 f_angle_d 0.957495264595 f_chiral_restr 0.0528471216841 f_bond_d 0.00806324871137 f_plane_restr 0.00524784448613
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7792 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 10
Software Software Software Name Purpose PHENIX refinement PHENIX refinement HKL-2000 data scaling HKL-2000 data collection HKL-2000 data reduction MOLREP phasing