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Dimeric DARPin A_distance_R7 complex with EpoR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ERN predicted model, 1ERN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 295 0.2 M NaCl, 0.1 M Tris pH 8.5, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 4.14 70.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.09 α = 90 b = 117.09 β = 90 c = 233.587 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2018-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.00001 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 5.101 46.79 98.38 0.116 0.123 0.03905 0.996 9.92 9.8 4205
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 5.101 5.283 98.74 2.75 0.884 0.585 0.9 10.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE predicted model, 1ERN 5.101 46.79 3786 421 98.62 0.23254 0.225 0.2467 0.2989 0.3026 RANDOM 434.475
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.95 1.97 3.95 -12.81
RMS Deviations Key Refinement Restraint Deviation r_mcangle_it 60.08 r_scbond_it 55.486 r_mcbond_it 38.47 r_dihedral_angle_2_deg 30.88 r_dihedral_angle_4_deg 18.85 r_dihedral_angle_3_deg 15.809 r_dihedral_angle_1_deg 6.346 r_angle_refined_deg 1.443 r_chiral_restr 0.095 r_bond_refined_d 0.006
RMS Deviations Key Refinement Restraint Deviation r_mcangle_it 60.08 r_scbond_it 55.486 r_mcbond_it 38.47 r_dihedral_angle_2_deg 30.88 r_dihedral_angle_4_deg 18.85 r_dihedral_angle_3_deg 15.809 r_dihedral_angle_1_deg 6.346 r_angle_refined_deg 1.443 r_chiral_restr 0.095 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3728 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing