☰ Navigation Tabs
Structure of wild-type CAO1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5U8X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 281 28 % sodium polyacrylate
0.1 M HEPES pH 6
Crystal Properties Matthews coefficient Solvent content 2.8 56.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.305 α = 90 b = 101.305 β = 90 c = 449.205 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-08-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97918 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 50 97.9 0.139 0.998 13.9 10.4 168673
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.04 2.16 1.681 0.492
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5U8X 2.04 49.41 161048 7569 98.18 0.18269 0.18131 0.1912 0.21107 0.2184 RANDOM 38.772
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.75 0.37 0.75 -2.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.988 r_dihedral_angle_4_deg 16.279 r_dihedral_angle_3_deg 13.418 r_dihedral_angle_1_deg 7.931 r_long_range_B_refined 6.294 r_long_range_B_other 6.27 r_scangle_other 5.023 r_mcangle_other 3.583 r_mcangle_it 3.582 r_scbond_it 3.381
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.988 r_dihedral_angle_4_deg 16.279 r_dihedral_angle_3_deg 13.418 r_dihedral_angle_1_deg 7.931 r_long_range_B_refined 6.294 r_long_range_B_other 6.27 r_scangle_other 5.023 r_mcangle_other 3.583 r_mcangle_it 3.582 r_scbond_it 3.381 r_scbond_other 3.381 r_mcbond_it 2.633 r_mcbond_other 2.631 r_angle_refined_deg 1.417 r_angle_other_deg 1.262 r_chiral_restr 0.062 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15903 Nucleic Acid Atoms Solvent Atoms 1135 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling REFMAC phasing