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2.05 Angstrom Resolution Crystal Structure of Hypothetical Protein KP1_5497 from Klebsiella pneumoniae.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 292 Protein: 8.0 mg/ml, 0.5M Sodium chloride, 0.01M Tris-HCl pH 8.3;
Screen: Classics II (D7), 0.1M Bis-Tris pH 6.5, 25% (w/v) PEG3350;
Crystal Properties Matthews coefficient Solvent content 2.18 43.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.482 α = 90 b = 123.806 β = 90 c = 299.664 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD C(111) 2018-04-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-E 0.97872 APS 21-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 30 99.8 0.095 0.095 0.105 0.044 20.5 5.5 87989 -3 31.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.09 100 0.832 0.832 0.922 0.393 0.676 2 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.05 29.62 83398 4491 99.52 0.20229 0.20075 0.23131 0.2334 RANDOM 41.545
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.53 1.09 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.37 r_dihedral_angle_4_deg 12.282 r_dihedral_angle_3_deg 8.68 r_long_range_B_refined 6.354 r_long_range_B_other 6.245 r_dihedral_angle_1_deg 2.998 r_scangle_other 2.953 r_mcangle_it 2.383 r_mcangle_other 2.382 r_scbond_it 1.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.37 r_dihedral_angle_4_deg 12.282 r_dihedral_angle_3_deg 8.68 r_long_range_B_refined 6.354 r_long_range_B_other 6.245 r_dihedral_angle_1_deg 2.998 r_scangle_other 2.953 r_mcangle_it 2.383 r_mcangle_other 2.382 r_scbond_it 1.98 r_scbond_other 1.92 r_mcbond_it 1.54 r_mcbond_other 1.54 r_angle_refined_deg 1.469 r_angle_other_deg 0.377 r_chiral_restr 0.067 r_gen_planes_refined 0.054 r_gen_planes_other 0.052 r_bond_refined_d 0.006 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11006 Nucleic Acid Atoms Solvent Atoms 763 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing