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Structure of Aedes aegypti OBP22 in the complex with arachidonic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 PEG 3350 12 w/v, 0.1M sodium HEPES, 10mM cadmium chloride, 6mM cobalt chloride, 6mM magnesium chloride
Crystal Properties Matthews coefficient Solvent content 1.97 37.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.21 α = 90 b = 40.844 β = 117.24 c = 56.278 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 X 200K-A VariMax Cu-HF 2018-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 27.9 99.41 0.11 0.114 0.02954 0.998 17.88 14.6 19395 23.36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.916 99.01 0.7619 0.7922 0.2127 0.929 4.15 13.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 27.9 17296 1927 98.47 0.19283 0.18918 0.1901 0.22579 0.2284 RANDOM 27.357
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -0.07 0.6 -0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.789 r_dihedral_angle_4_deg 24.944 r_dihedral_angle_3_deg 14.027 r_dihedral_angle_1_deg 5.521 r_long_range_B_refined 3.963 r_long_range_B_other 3.902 r_scangle_other 1.639 r_angle_refined_deg 1.263 r_mcangle_it 1.186 r_mcangle_other 1.186
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.789 r_dihedral_angle_4_deg 24.944 r_dihedral_angle_3_deg 14.027 r_dihedral_angle_1_deg 5.521 r_long_range_B_refined 3.963 r_long_range_B_other 3.902 r_scangle_other 1.639 r_angle_refined_deg 1.263 r_mcangle_it 1.186 r_mcangle_other 1.186 r_scbond_it 0.995 r_scbond_other 0.995 r_mcbond_it 0.735 r_mcbond_other 0.734 r_angle_other_deg 0.497 r_chiral_restr 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1952 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHENIX phasing