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Crystal Structure of human KRAS G12C covalently bound to AMG 510
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 1mM MgCl2, 0.1M MES pH6.5, 30% PEG4000
Crystal Properties Matthews coefficient Solvent content 1.87 34.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.868 α = 90 b = 58.417 β = 90 c = 65.884 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-04-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.9774 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 30 97 0.162 0.184 0.085 6.9 4.4 19647 22.38
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 96.3 0.521 0.596 0.283 0.797 2.54 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 30 18077 935 96.99 0.18252 0.18092 0.1874 0.21519 0.2201 RANDOM 24.801
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.44 -0.95 1.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.111 r_dihedral_angle_4_deg 18.394 r_dihedral_angle_3_deg 12.968 r_dihedral_angle_1_deg 5.171 r_long_range_B_refined 4.121 r_long_range_B_other 3.734 r_scangle_other 1.662 r_mcangle_it 1.453 r_mcangle_other 1.452 r_angle_refined_deg 1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.111 r_dihedral_angle_4_deg 18.394 r_dihedral_angle_3_deg 12.968 r_dihedral_angle_1_deg 5.171 r_long_range_B_refined 4.121 r_long_range_B_other 3.734 r_scangle_other 1.662 r_mcangle_it 1.453 r_mcangle_other 1.452 r_angle_refined_deg 1.08 r_scbond_it 0.981 r_scbond_other 0.98 r_mcbond_it 0.829 r_mcbond_other 0.829 r_angle_other_deg 0.675 r_chiral_restr 0.052 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1336 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 70
Software Software Software Name Purpose BOS data collection HKL-2000 data reduction DENZO data reduction HKL-2000 data scaling SCALEPACK data scaling MOLREP phasing REFMAC refinement Coot model building