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Structure of Aedes aegypti OBP22 in the complex with palmitoleic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other OBP22 structure slved by tantalum SAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 291 1.4M ammonium sulfate, 0.1M citric acid
Crystal Properties Matthews coefficient Solvent content 3.08 60.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 154.214 α = 90 b = 154.214 β = 90 c = 58.163 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 X 200K-A VariMax Cu-HF 2018-09-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 38.55 97.45 0.07469 0.08434 0.03782 0.996 12.39 3.7 89691 26.23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.175 80.92 0.4459 0.5761 0.3608 0.712 2.37 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT OBP22 structure slved by tantalum SAD 2.1 38.55 81980 4398 95.4 0.21235 0.21053 0.2017 0.24688 0.2347 RANDOM 30.226
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.08 1.08 -2.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.351 r_dihedral_angle_4_deg 23.668 r_dihedral_angle_3_deg 14.806 r_dihedral_angle_1_deg 5.832 r_long_range_B_refined 4.867 r_long_range_B_other 4.794 r_scangle_other 3.317 r_mcangle_it 2.742 r_mcangle_other 2.741 r_scbond_it 2.033
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.351 r_dihedral_angle_4_deg 23.668 r_dihedral_angle_3_deg 14.806 r_dihedral_angle_1_deg 5.832 r_long_range_B_refined 4.867 r_long_range_B_other 4.794 r_scangle_other 3.317 r_mcangle_it 2.742 r_mcangle_other 2.741 r_scbond_it 2.033 r_scbond_other 2.033 r_mcbond_it 1.726 r_mcbond_other 1.725 r_angle_refined_deg 1.015 r_angle_other_deg 0.354 r_chiral_restr 0.051 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8733 Nucleic Acid Atoms Solvent Atoms 336 Heterogen Atoms 103
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHASER phasing