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The co-crystal structure of BRAF(V600E) with ponatinib
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 2 M AMMONIUM SULFATE, 5% (V/V) 2
-PROPANOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
291K
Crystal Properties Matthews coefficient Solvent content 2.7 54.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.839 α = 90 b = 118.839 β = 90 c = 51.53 γ = 90
Symmetry Space Group P 43 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.03324 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.105 118.839 99.5 0.101 13.6 8.1 21866
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.11 2.22 98.4 0.403 0.403 1.9 8.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.11 84.03 20746 1117 99.4 0.188 0.185 0.1954 0.245 0.2558 RANDOM 32.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.15 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.82 r_dihedral_angle_4_deg 21.514 r_dihedral_angle_3_deg 16.275 r_dihedral_angle_1_deg 6.946 r_angle_refined_deg 1.963 r_angle_other_deg 1.033 r_chiral_restr 0.103 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_gen_planes_other 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.82 r_dihedral_angle_4_deg 21.514 r_dihedral_angle_3_deg 16.275 r_dihedral_angle_1_deg 6.946 r_angle_refined_deg 1.963 r_angle_other_deg 1.033 r_chiral_restr 0.103 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_gen_planes_other 0.007 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2108 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 88
Software Software Software Name Purpose iMOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement