☰ Navigation Tabs
Human sterol 14a-demethylase (CYP51) in complex with the functionally irreversible inhibitor (R)-N-(1-(3-chloro-4'-fluoro-[1,1'-biphenyl]-4-yl)-2-(1H-imidazol-1-yl)ethyl)-4-(5-(3-fluoro-5-(5-fluoropyrimidin-4-yl)phenyl)-1,3,4-oxadiazol-2-yl)benzamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4UHI PDB entry 4UHI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 289 15 mM sodium cholate, 8% PEG3350, 0.2 M potassium formate, pH 7.4
Crystal Properties Matthews coefficient Solvent content 2.68 54.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.664 α = 90 b = 117.664 β = 90 c = 157.842 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2019-03-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.979 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 94.35 99.6 0.046 0.997 12.3 5.6 26405
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.87 99.3 0.996 0.853 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 4UHI 2.8 28.098 26289 1258 99.561 0.228 0.2268 0.2559 0.2284
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.581 1.581 -3.162
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.611 r_lrange_it 15.389 r_lrange_other 15.388 r_dihedral_angle_3_deg 14.007 r_dihedral_angle_4_deg 13.019 r_mcangle_it 11.129 r_mcangle_other 11.129 r_scangle_it 10.792 r_scangle_other 10.791 r_mcbond_it 7.348
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.611 r_lrange_it 15.389 r_lrange_other 15.388 r_dihedral_angle_3_deg 14.007 r_dihedral_angle_4_deg 13.019 r_mcangle_it 11.129 r_mcangle_other 11.129 r_scangle_it 10.792 r_scangle_other 10.791 r_mcbond_it 7.348 r_mcbond_other 7.342 r_scbond_it 6.923 r_scbond_other 6.922 r_dihedral_angle_1_deg 6.165 r_chiral_restr_other 1.232 r_angle_refined_deg 1.166 r_angle_other_deg 1.134 r_nbd_other 0.351 r_symmetry_nbd_refined 0.298 r_symmetry_xyhbond_nbd_refined 0.275 r_symmetry_nbd_other 0.258 r_nbd_refined 0.239 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.176 r_symmetry_nbtor_other 0.085 r_symmetry_xyhbond_nbd_other 0.083 r_chiral_restr 0.041 r_gen_planes_refined 0.007 r_bond_refined_d 0.003 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7172 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 457
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing