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Fusidic acid bound AcrB_N298A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5JMN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.6 291 0.05M ADA, pH 6.6, 0.15-0.25M AMMONIUM SULFATE, 5% GLYCEROL, 8-9% PEG4000
Crystal Properties Matthews coefficient Solvent content 3.7 66.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.222 α = 90 b = 162.632 β = 90 c = 245.467 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.98 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 49.76 100 0.17 10.6 8 144226
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.85 1.83
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5JMN 2.8 49.76 137002 7127 99.97 0.21236 0.21057 0.214 0.24652 0.247 RANDOM 58.741
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.56 4.17 -1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.107 r_dihedral_angle_4_deg 14.203 r_dihedral_angle_3_deg 13.586 r_dihedral_angle_1_deg 5.694 r_long_range_B_refined 4.06 r_long_range_B_other 4.06 r_mcangle_it 2.279 r_mcangle_other 2.279 r_scangle_other 2.141 r_mcbond_it 1.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.107 r_dihedral_angle_4_deg 14.203 r_dihedral_angle_3_deg 13.586 r_dihedral_angle_1_deg 5.694 r_long_range_B_refined 4.06 r_long_range_B_other 4.06 r_mcangle_it 2.279 r_mcangle_other 2.279 r_scangle_other 2.141 r_mcbond_it 1.293 r_mcbond_other 1.293 r_scbond_it 1.198 r_scbond_other 1.198 r_angle_refined_deg 1.18 r_angle_other_deg 1.085 r_chiral_restr 0.042 r_bond_refined_d 0.002 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 25972 Nucleic Acid Atoms Solvent Atoms 523 Heterogen Atoms 760
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing