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Cryogenic temperature structure of the ground state of AtPhot2LOV2 recorded after an accumulated dose of 2.68 MGy
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4EEP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 12-17 % PEG8000
0.2 M Calcium acetate
0.1 M MES
Crystal Properties Matthews coefficient Solvent content 1.94 36.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.148 α = 90 b = 40.148 β = 90 c = 131.575 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2015-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.968 ESRF MASSIF-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.38 38.4 99.8 0.999 16.84 7.18 23065 18.75
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.38 1.43 99.8 0.568 1.68 6.32
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4eep 1.38 38.4 21881 1183 99.84 0.14121 0.13971 0.1397 0.17034 0.1703 RANDOM 16.625
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.14 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.434 r_dihedral_angle_4_deg 21.116 r_dihedral_angle_3_deg 12.486 r_dihedral_angle_1_deg 6.333 r_long_range_B_refined 2.533 r_long_range_B_other 2.126 r_scangle_other 1.696 r_scbond_other 1.394 r_scbond_it 1.393 r_angle_refined_deg 1.354
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.434 r_dihedral_angle_4_deg 21.116 r_dihedral_angle_3_deg 12.486 r_dihedral_angle_1_deg 6.333 r_long_range_B_refined 2.533 r_long_range_B_other 2.126 r_scangle_other 1.696 r_scbond_other 1.394 r_scbond_it 1.393 r_angle_refined_deg 1.354 r_angle_other_deg 1.272 r_mcangle_it 1.253 r_mcangle_other 1.253 r_mcbond_it 0.96 r_mcbond_other 0.952 r_rigid_bond_restr 0.772 r_chiral_restr 0.066 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 963 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing