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TETR(D) N82A MUTANT IN COMPLEX WITH DOXYCYCLINE AND MAGNESIUM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FKK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295 precipitant: 0.1 M HEPES pH 7.5, 1.75M (NH4)2SO4, 5% PEG 400, 0.2M NaCl,
protein: 0.1mL protein, 0.3mL 2mM doxyTc, 0.001mL 3M MgCl2, 100mM NaCl, 50mM Tris, pH 8.0,
Protein/precipitant 2/2
Crystal Properties Matthews coefficient Solvent content 2.26 45.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.378 α = 90 b = 68.378 β = 90 c = 180.008 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 70 2011-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 32.94 99.8 0.142 0.149 0.043 10.6 10.8 40487 24.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 98.9 0.935 1.052 0.467 2.1 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5FKK 1.8 31.98 38282 2039 99.43 0.21075 0.20905 0.24309 0.2381 RANDOM 27.671
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 0.3 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.633 r_dihedral_angle_4_deg 20.953 r_dihedral_angle_3_deg 13.956 r_dihedral_angle_1_deg 6.038 r_long_range_B_refined 5.527 r_long_range_B_other 5.506 r_scangle_other 3.288 r_mcangle_it 3.005 r_mcangle_other 3.004 r_scbond_other 2.017
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.633 r_dihedral_angle_4_deg 20.953 r_dihedral_angle_3_deg 13.956 r_dihedral_angle_1_deg 6.038 r_long_range_B_refined 5.527 r_long_range_B_other 5.506 r_scangle_other 3.288 r_mcangle_it 3.005 r_mcangle_other 3.004 r_scbond_other 2.017 r_scbond_it 2.013 r_mcbond_it 1.798 r_mcbond_other 1.798 r_angle_refined_deg 1.797 r_angle_other_deg 1.507 r_chiral_restr 0.084 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3192 Nucleic Acid Atoms Solvent Atoms 262 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction SCALA data scaling REFMAC phasing