☰ Navigation Tabs
Fragment AZ-022 binding at the p53pT387/14-3-3 sigma interface
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5MOC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 0.1M Hepes, pH7.5, 27%PEG, 5% Glycerol, 0.2M Calcium Chloride, 2mM DTT.
Crystal Properties Matthews coefficient Solvent content 2.64 53.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.78 α = 90 b = 112.51 β = 90 c = 62.59 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 200K 2017-08-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE RIGAKU MICROMAX-003 1.54187
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 26.49 87 0.125 0.975 8.5 4 81079 20426
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.93 86.4 0.4 0.865 3.1 3.8 4927
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5MOC 1.88 26.49 19337 1075 86 0.18077 0.17808 0.1934 0.22994 0.2409 RANDOM 12.74
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 -0.03 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.879 r_dihedral_angle_3_deg 13.992 r_dihedral_angle_4_deg 12.806 r_dihedral_angle_1_deg 5.708 r_long_range_B_refined 5.459 r_long_range_B_other 4.868 r_scangle_other 2.649 r_mcangle_it 1.779 r_mcangle_other 1.779 r_scbond_it 1.711
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.879 r_dihedral_angle_3_deg 13.992 r_dihedral_angle_4_deg 12.806 r_dihedral_angle_1_deg 5.708 r_long_range_B_refined 5.459 r_long_range_B_other 4.868 r_scangle_other 2.649 r_mcangle_it 1.779 r_mcangle_other 1.779 r_scbond_it 1.711 r_scbond_other 1.71 r_angle_refined_deg 1.466 r_mcbond_it 1.101 r_mcbond_other 1.101 r_angle_other_deg 1.037 r_chiral_restr 0.075 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1881 Nucleic Acid Atoms Solvent Atoms 331 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement PHENIX refinement MOSFLM data reduction Aimless data scaling MOLREP phasing