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The crystal structure of glycogen phosphorylase in complex with 13
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 SMALL TUBES 6.7 289 10 mM BES buffer, pH 6.7
Crystal Properties Matthews coefficient Solvent content 2.54 51.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.946 α = 90 b = 127.946 β = 90 c = 115.796 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD AGILENT ATLAS CCD 2018-05-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION SUPERNOVA 1.5419
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.37 13.88 90 0.085 0.996 12.6 5.1 35139
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.37 2.46 77.2 0.567 0.855 2.1 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.37 13.88 33341 1762 88.67 0.15678 0.15373 0.1635 0.21354 0.2152 RANDOM 29.555
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.15 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.09 r_dihedral_angle_4_deg 18.356 r_dihedral_angle_3_deg 15.574 r_dihedral_angle_1_deg 6.959 r_long_range_B_refined 5.982 r_long_range_B_other 5.972 r_scangle_other 4.551 r_mcangle_it 3.071 r_mcangle_other 3.071 r_scbond_it 2.871
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.09 r_dihedral_angle_4_deg 18.356 r_dihedral_angle_3_deg 15.574 r_dihedral_angle_1_deg 6.959 r_long_range_B_refined 5.982 r_long_range_B_other 5.972 r_scangle_other 4.551 r_mcangle_it 3.071 r_mcangle_other 3.071 r_scbond_it 2.871 r_scbond_other 2.871 r_mcbond_it 1.991 r_mcbond_other 1.99 r_angle_refined_deg 1.506 r_angle_other_deg 1.273 r_chiral_restr 0.071 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6582 Nucleic Acid Atoms Solvent Atoms 227 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling REFMAC phasing