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N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH iBET-BD2 (GSK046)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 25%w/v PEG1500, 0.1M SPG buffer, pH 6
Crystal Properties Matthews coefficient Solvent content 2.14 42.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.133 α = 90 b = 44.059 β = 90 c = 78.881 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU 2017-08-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 44.06 87.3 0.996 28.6 4.4 15277
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 49.1 0.701 8.5 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.601 39.44 15277 786 86.433 0.158 0.1561 0.1605 0.1841 0.1898 15.406
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.014 0.298 -0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.435 r_dihedral_angle_3_deg 12.31 r_dihedral_angle_4_deg 9.793 r_dihedral_angle_1_deg 5.94 r_lrange_it 5.701 r_lrange_other 5.699 r_scangle_it 2.296 r_scangle_other 2.295 r_mcangle_other 1.527 r_mcangle_it 1.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.435 r_dihedral_angle_3_deg 12.31 r_dihedral_angle_4_deg 9.793 r_dihedral_angle_1_deg 5.94 r_lrange_it 5.701 r_lrange_other 5.699 r_scangle_it 2.296 r_scangle_other 2.295 r_mcangle_other 1.527 r_mcangle_it 1.52 r_scbond_it 1.375 r_scbond_other 1.374 r_angle_other_deg 1.182 r_angle_refined_deg 1.149 r_mcbond_it 0.903 r_mcbond_other 0.883 r_nbd_refined 0.19 r_symmetry_nbd_refined 0.182 r_nbtor_refined 0.17 r_symmetry_nbd_other 0.169 r_nbd_other 0.164 r_xyhbond_nbd_refined 0.162 r_symmetry_xyhbond_nbd_refined 0.152 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.055 r_bond_other_d 0.004 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1062 Nucleic Acid Atoms Solvent Atoms 247 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling