Experiment: 6TEJ

Structure of apo IrtAB devoid SID in complex with sybody Syb_NL5

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4Q4H

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
3	VAPOR DIFFUSION, SITTING DROP	7.5	277	28% (V/V) PEG 400, 0.2M NaCl, 0.1M HEPES

Crystal Properties
Matthews coefficient	Solvent content
1.92	35.84

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 103.06	α = 90
b = 78.58	β = 98.2
c = 133.57	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	3	x-ray	100	PIXEL	DECTRIS PILATUS 2M-F		2018-09-02	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1.000	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.7	47.43	99.9	0.105	0.114	0.999	15.03	6.847		58376			72.353

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.7	2.77	100		1.688	1.825	0.68	1.21	6.928

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Cut-off Sigma (F)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	4q4h	2.7	47.43	1.36	58326	2916	99.87	0.2655	0.2638	0.2676	0.2961	0.2994	92.1334

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9334
Nucleic Acid Atoms
Solvent Atoms	54
Heterogen Atoms	34

Software

Software
Software Name	Purpose
PHENIX	refinement
Coot	model building
XSCALE	data reduction
XSCALE	data scaling
PHASER	phasing
XDS	data collection